Stenglein Lab Standard Taxonomic Assessment

Contents:

  • Pipeline Summary
    • Input
    • Quality Assessment and Pre-Processing
    • Host Filtering
    • De novo Assembly of Reads
    • Taxonomic Assessment of Contigs
    • Output
  • Software Requirements
  • Installation Tutorial
  • Running the Pipeline
    • Configuration
    • Docker Profile
    • Usage
  • Example Analysis and Output
  • References
Stenglein Lab Standard Taxonomic Assessment
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© Copyright 2018, Lauren Kleine.

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